Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is tha...aximum information content. Link for those who looking for structure of Bam and sff file: Bam: http://s...3922 days ago
Next generation sequencing in R or bioconductor environment
...amtools provides functions for parsing and inspecting samtools BAM formatted binary alignment data. SAM/BAM is quickly becoming a univers...ides support for importing into R short read alignment data in BAM format (via Rsamtools) and as...3627 days ago
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List of Bioinformatics Software Tools for Next Generation Sequencing
...face Takes NGS data (.fastq, BAM, SAM), microarrays (Affymetri...iles Genome browser: BED and BAM files, Public data- 1500 BED...05% of the population Input: BAM file input→ suggest runn...are aligned with BWA Input: BAM Output: either VCF or ANNOVA...2911 days ago
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Some useful Bioinformatics links
...www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_olc.pdf SAM and BAM filtering oneliners https://...ww.nature.com/articles/nmeth.3444 vezzi/FRC_align: Computes FRC from SAM/BAM file and not from afg files...2244 days ago
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