Results for "Bash Scripting"
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Bioinformatics software for biologists in the genomics era
The genome sequencing revolution is approaching a landmark figure of 1000 completel...ormaticians, so a gap exists between the user-friendly software needed and the scripting/programming infrastructure of...3783 days ago
- This tutorial assumes no previous knowledge of scripting or programming, yet progresses rapidly to...eference and source of knowledge on shell scripting techniques. The exercises and...premise that the only way to really learn scripting is to write scripts. This bo...
2995 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome...ality assessment and control of high-throughput sequencing data). It contains bash/perl...
2879 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for...tem. Most Linux systems utilize Bourne Again SHell (bash), but there are several addit...i@quince-srv2 ~/linuxTutorial]$ echo $SHELL /bin/bash...2870 days ago
- Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox f...cation and all features are available through menus, toolbars and graphics. No scripting skills required. Powerful. M...
2837 days ago
- R-chie allows you to make arc diagrams of RNA secondary structures, allowing f...available for download and local use for more customized figures and scripting. http://www.e-rna.org/r-chie...
2799 days ago
- EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) data to identify CNVs. EXCAVATOR2 enhances the identificat...
2709 days ago
- caffMatch is a novel scaffolding tool based on Maximum-Weight Matching able to produce high-quality scaffolds fro...ata (reads and contigs). The tool is written in Python 2.7. It also includes a bash scri...
2696 days ago
Perlbrew: admin-free perl installation management tool.
perlbrew is an admin-free perl installation management tool. The latest version is 0.7...r terminal: \curl -L https://install.perlbrew.pl | bash Or, if your system does no...# Linux \wget -O - https://install.perlbrew.pl | bash #...2485 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grounded in theory and leave t...l course prerequisites, although the course will require familiarity with UNIX scripting and/or programming to complet...2345 days ago
