BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detect...oints within reads increases mapping and alignment complexity. We describe an algorithm that is up to 20 times faster...2709 days ago
1982 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaea...2695 days ago
2670 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous pr...reds or even thousands of sequences using a randomized inference algorithm to reduce the computational c...2656 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome...aximally scoring chains of ordered gene pairs are computed and reported. This algorithm can be used to mine large evo...2644 days ago
2628 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of...olders using Illumina paired reads of three bacterial genomes. Our algorithm constructs a comparable numbe...2550 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite that allows users to analyse data pr...parent (cp. Tutorial 'Examining Public Next-Gen Data..'). Extensibility:Algorithm developers and computer progr...2506 days ago
MOSS: A System for Detecting Software Similarity
Moss (for a Measure Of Software Similarity) is an automati...4, Moss has been very effective in this role. The algorithm behind moss is a significant improvement over other cheating detection algorithms (at least, over those known...2350 days ago