Results for "Bioinformatics"
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Although centromeres are essential for life and are the subject of extensive research, centromere locations in yeast genomes are difficult to infer, and in most species they are still unknown. Recently, the chromatin conformation assay Hi-C has been re-purposed for diverse applications, including...Tags: Bioinformatics, Centromere, Centurion, HiC, Annotation
2998 days ago
- HiCdat: a fast and easy-to-use Hi-C data analysis tool HiCdat is easy-to-use and provides solutions starting from aligned reads up to in-depth analyses. Importantly, HiCdat is focussed on the analysis of larger structural features of chromosomes, their correlation to genomic and epigenomic featu...
Tags: Bioinformatics, HiC, Analysis, HiCdat, Annotation
2997 days ago
UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for standalone command-line use on various supported Linux and UNIX platforms. To determine which set of binaries to download, type "uname -a" on the command line to display your machine type. In most cases the usage state...Tags: Bioinformatics, UCSC, Genome, Browser, Blat, Software
2992 days ago
- This tutorial assumes no previous knowledge of scripting or programming, yet progresses rapidly toward an intermediate/advanced level of instruction . . . all the while sneaking in little nuggets of UNIX® wisdom and lore. It serves as a textbook, a manual for self-study, and as a reference an...
Tags: Bioinformatics, Guide, Tutorial, Genome, Script, Bash
2992 days ago
- This is a collection of libraries and high-quality end-user scripts for bioinformatic analysis, including working with gene annotation, collecting data scores from a variety of modern file formats, and conversion between file formats. The Bio::ToolBox libraries provide a unified, abstracted inter...
Tags: Bioinformatics, Guide, Tutorial, Perl, Script, Toolbox, Bio
2990 days ago
- Generic Genome Browser Version 2: A Tutorial for Administrators This is an extensive tutorial to take you through the main features and gotchas of configuring GBrowse as a server. This tutorial assumes that you have successfully set up Perl, GD, BioPerl and the other GBrowse dependencies. If you...
Tags: Bioinformatics, Guide, Tutorial, Genome, Script, Bash, GBrowse, Annotaion, Browser
2990 days ago
- Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeogr...
Tags: Bioinformatics, Computational Biology, Reads, RAD-Seq, NGS
2985 days ago
- This software is designed to identify both simple and complex rearrangements from paired-end sequencing data. Users could ran it easily by just alling SVelter.py with proper parameters. It's also possible to ran it on multiple cores by calling different sub-functions separately. More a...
Tags: Bioinformatics, Computational Biology, Svelter, Rearrangement
2980 days ago
- Destruct is a tool for joint prediction of rearrangement breakpoints from single or multiple tumour samples. More at https://bitbucket.org/dranew/destruct
Tags: Bioinformatics, Computational Biology, destruct, Rearrangement, Breakpoint
2980 days ago
- Machine Learning in Python Simple and efficient tools for data mining and data analysis Accessible to everybody, and reusable in various contexts Built on NumPy, SciPy, and matplotlib Open source, commercially usable - BSD license More at http://scikit-learn.org/stable/index.html
Tags: Bioinformatics, Computational Biology, Python, Machine Learning, Modules, Scikit, Learn
2980 days ago
