2580 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic...2558 days ago
DIYA: a bacterial annotation pipeline for any genomics lab
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV http://gmod.org/wiki/Diya2521 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and between genomes is essential for...e visualization of the results. We tested the software on both simulated and biologica...2380 days ago
2369 days ago
Biological file format tutorial
This section explains some of the commonly used file formats in bioinformatics. The information provided here is basic and designed to help users to distinguish the diff...2351 days ago
MeDuSa: a multi-draft based scaffolder
MeDuSa (Multi-Draft based Scaffolder), an algorithm for genome scaffolding. MeDuSa expl....g. their phylogenetic relationships) or the availability of paired end read libraries.2293 days ago
Building Web UIs With Mojolicious Perl
Mojolicious is one of 3 leading web frameworks available in the perl ecosystem (along w...stall, has an applciation generator script and many plugins and extensions. Libraries for developing Web applicatio...2342 days ago
2318 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
we design a simple heuristic method to further revise our single reference-based scaffo...cerning phylogenetic relationships among the draft and reference genomes and libraries of paired-end reads. To valid...2272 days ago