Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. J...encing libraries. Aird et al, Genome Biology 12:R18, 2011 Full Text Ampli...count data. Anders and Huber, Genome Biology 11:R106, 2010 Full Text edge...te computational resources for plant biology...3792 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and sha.../msr_er/archive/2011/10/18/microsoft-biology-foundation-evolves-into-new-t...ence Application") http://wolbachia.biology.virginia.edu/WuLab/Software.h...enkins and its plug-in API to create biology...3770 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins tools CASTp : h...Lab in the Department of Computational and System Biology at the University of Pittsbur...of depth can be found here. FINDSITE: http://cssb.biology....3757 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides an...3638 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq software...3532 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening and ana...was produced in affiliation with the Computational Biology Center at Memorial Sloan-Kett...undation, National Institutes of Health, NASA Astrobiology...3554 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
...ts IICB - Indian Institute of Chemical Biology, Calcutta IIP - Indian Inst...B - Centre for Cellular & Molecular Biology, Hyderabad CECRI - Central...Centre for Cellular and Molecular Biology Environment Protection Training and Research Institute Inte...2584 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq softwa...3255 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biological functions. In this section we include tools that can assist in prediction of intera...2215 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...package, combines machine learning model with biology and statistics to predict non...program, uses “the same feature set and training data as CADD to train a deep...ps; “There are four different datasets: training, validation, testing, and Cli...2922 days ago