Results for "Bonobo and Neandertal genome sequencing"
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Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/3015 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between diff...FF/GTF, VCF. CrossMap is designed to liftover genome coordinates between assemblie...a program for aligning sequences to reference genome. W...
3015 days ago
- Spines Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad In...program for high-sensitivity, genome-wide synteny; Papaya, an all-...for less diverged sequences; and SLAP, a context-sensitive local...
3015 days ago
- flo - same species annotations lift over pipeline Lift over...the process of transferring annotations from one genome assembly to another. Usually...ift over is done because there is a new, improved genome assembly for the species and good q...
3013 days ago
- NCBI Remap. This tool is conceptually similar to liftOver in that in manages conversions between a pair of genome assemblies but it uses differ...r NCBI Remap. More at http://www.ncbi.nlm.nih.gov/genome/too...
3012 days ago
- Although centromeres are essential for life and are the subject of extensive...centromere locations in yeast genomes are difficult to infer, and in most species they are stil...plications, including de novo genome ass...with a limited amount of Hi-C sequencing. Paper:http://www.ncbi.nlm.n...
3012 days ago
UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for standalone command-line use on various supported Linux and UNIX p...y with no arguments. The UCSC Genome Browser and Blat software are free for acade...t commercial licensing of the Genome Browser software, see http://...3006 days ago
- Generic Genome Browser Version 2: A Tutorial for Administrators This i...to take you through the main features and gotcha...successfully set up Perl, GD, BioPerl and the other...!) Later we will show how to set up a genome size database using the berkeleydb and MySQL...
3005 days ago
Ensembl comparative genomics resources
...hat facilitates comprehensive and reproducible analysis of chordate genome data. Ensembl computes pairwise and multiple whole-genome alignments from which large-s...l Protein Families, GeneTrees and homologies for both protein-codi...plots, a gene family locator and different alignment views. The E...2995 days ago
