Illumina based assembly pipeline steps !
...uenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment (Bowtie 2) Sort and index alignments...873 days ago
Common steps for reads mapping !
...ere are some general steps to follow for mapping reads to a genome: Choose a read mapper: There are many read mappers available, such as BWA, Bowtie, and HISAT2. Choose a mapper...419 days ago