Results for "C"
Top-level pages
Worldwide funding agencies to fund your bioinformatics research !!
...you seeking funding for research or training in a particular area? Check out the following agencies ... National Science Fo...the winter and the summer. Society for Women’s Health...aimed at finding solutions to children’s health problem...2938 days ago
- ...Simple Linux Utility for Resource Management. SLURM was developed at the Lawrence Livermore National Lab and c...queue systems. You write a batch script then submit it to the...mit jobs to SLURM, how SLURM decides when to schedule your job...guaranteed to be there. No one can infringe on that memory spa...
2914 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly rep...I saw elba")—with genetic palindromes it does not matte...s bonds with (thymine (T) and cytosine (C) always bonds with...2211 days ago
- ...member of the BBMap/BBTools package. It is a multipurpose tool designed for converting reads or other nucle...gzip zip ascii-33 (sanger) ascii-64 (old Illumina) paired fi...line-wrapping length Reverse-complementing (all reads or onl...sam.gz out=stdout.fa Reverse-complement reads: reformat.sh i...
2714 days ago
- Linux Commands Cheat Sheet F...tory to dir cd .. — go up one directo...nbsp; ln -s file link — create symbolic link to file&nb...s of app which app — show which app w...st lsof -i tcp:1337 — list all proces...
2874 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
...----------- Gene Set Clustering based on Functional annotation GeneSCF serves as command line tool for clusterin...tion (Gene Ontology, KEGG, REACTOME and NCG 4.0). It requires...; Requirement: GeneSCF only works on Linux system,...2872 days ago
- Bash Script source: https://gist.github.com/santhilalsubhash/367befcf5216be4b1fd9 Informati...Ex: https://gist.githubusercontent.com/santhilalsubhash/1e.... It generated two files1) Transcript wise chromosome location...Ex: https://gist.githubusercontent.com/santhilalsubhash/c9...
2106 days ago
- ...t: the mapping of a raw sequence read to a location within a reference genome. The mapping occurs because the sequences wit...first used and developed the scale. Phred quality score: a s...method for bead-based amplification of a library. A single a...
2869 days ago
Genome Assembly Tools and Software - PART1 !!
...ly take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for t...SWAP-Assembler 2 – A scalable and fully parallelized...buted the first diploid sequence of an individual human, and...for assembling 454 EST sequences against high quality refere...2686 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be executed and the order in which those actions are to be exec...p a line) add 1 to consec total endif...tements, and at the end of functions. It will make your progr...2659 days ago
