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CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those intervals from their observed adjacencies in modern species. We combine the res...2543 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
...od to further revise our single reference-based scaffolding tool CAR into a new one called Multi-CAR such that it can utilize mult...ent the contigs of a draft genome. In practical usage, our Multi-CAR does not require prior knowle...2251 days ago
Genome Assembly Tools and Software - PART1 !!
...ly-specic gene assembly, homology-guided overlap graph construction, and careful graph traversal. Ope...de novo assemblers give us the best overall metagenomic assembly. SCARF – Scaffolded and Corre...2685 days ago
Compress and decompress the sequence with perl
use strict; use warnings; my @char; while () { @char = split //; } comp(\@char); #--------------------- my $com= "r0a3m4a4j0"; my @com = split //, $com; dcomp (\@com); #dcomp sub here sub dcomp { my ($com_ref)=@_; my @com=@$com_ref; my $car; for (my $aa=0; $aa2514 days ago