Results for "Calling"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...e for full-genome alignment & comparisons] Searching for SNPs with cloud computing. Langmead et al, Genome Biol 10(11):R134, 2009 Full Text Calling SNPs without a reference sequ...3784 days ago
Next generation sequencing in R or bioconductor environment
...The chipseq package combines a variety of HT-Seq packages to a pipeline for ChIP-Seq data analysis. Documentation BayesPeak BayesPeak is a peak calling package for identifying DNA b...3629 days ago
Commercial and public next-gen-seq (NGS) software
...gov/papers/lmi/epigenomes/sissrs/ See also this thread for ChIP-Seq, until I get time to update this list. Alternate Base Calling Rolexa - R-based framework for base calling of Solexa data. Project publi...3524 days ago
Software packages for next gen sequence analysis
...input. Raja Jothi @ NIH. Perl. **See also this thread for ChIP-Seq, until I get time to update this list. Alternate Base Calling * Rolexa - R-based framework for base calling of Solexa data. Project publi...3247 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...for assembly, alignment, variant calling and analysis of NGS data Sup...s exome data and performs variant calling an average of 3 times faster...vo mutations, can perform variant calling at chrX; Input: VCF Output:...in BAM files, run through variant calling programs to generate intermed...2914 days ago
- ...h specific genotypes. The name Phred refers to the original Phred base-calling software, which first used an...cing reads. Increased read-depth translates into higher confidence for calling genomic variants. RNAME: ref...
2874 days ago
Genome Assembly Tools and Software - PART1 !!
...gs generated by another assembler) into longer contigs, by iteratively calling Vmatch and Trinity, until som...ing problems FermiKit 0.13 – De novo Assembly based Variant Calling pipeline for Illumina Short R...2690 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...tome into disjoint transcript clusters; uses sig-mers, a special type of k-mers) Software (C++) http://www.csbio.unc.edu/rs/ Variant calling ChimeRScope Fusion transcri...2376 days ago
List of non-commercial NGS genotype-calling software
...relies crucially on the accurate calling of SNPs and genotypes. Recent...ertainty associated with genotype calling, and will especially benefit...ads Software for SNP and genotype calling using single individuals and...that includes a mode for genotype calling IMPUTE2 http://mathgen.stats...2101 days ago
