List of generic simulation software/tools/resource with brief description and homepage !!!
...simulator A rapid whole genome simulation program http://biostat.mc.vanderbilt.edu/wiki/main/gwasimulatorHAP-SAMPLE An association simulator for candidate regions or genome scans http:...3730 days ago
Commercial and public next-gen-seq (NGS) software
...ie, BLAT and ELAND. From the Wold lab. G-Mo.R-Se - G-Mo.R-Se is a method aimed at using RNA-Seq short reads to build de novo gene models. First, candidate exons are built directly from...3512 days ago
Software packages for next gen sequence analysis
..., BLAT and ELAND. From the Wold lab. * G-Mo.R-Se - G-Mo.R-Se is a method aimed at using RNA-Seq short reads to build de novo gene models. First, candidate exons are built directly from...3236 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
..., only can handle Illumina data; cannot test candidate indels; written in C++, used...ation of heterozygous germline variants near candidate mutations”; Dependent u...ption: “An online tool for identifying candidate ESEs in vertebrate exons&rdqu...2902 days ago
Genome Assembly Tools and Software - PART1 !!
...retained introns, novel introns, and alternative splicing. Its scripts can also estimate gene expression levels, identify candidate polyadenylation sites, and identify candidate gene-fusion events. SAT-...2679 days ago
List of non-commercial NGS genotype-calling software
...//faculty.washington.edu/browning/beagle/beagle.html Multi-sample LD Candidate SNPs, genotype likelihoods So...http://mathgen.stats.ox.ac.uk/impute/impute_v2.html Multi-sample LD Candidate SNPs, genotype likelihoods So...2089 days ago