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RNAcon: web-server for the prediction and classification of non-coding RNAs
...s. The structural information based graph properties were used for the development of prediction model. The standalone version (Linux-based command-line) of RNAcon is freel...2498 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...ce its first launch in 2016. Here, we present a newly implemented background annotation engine for DFAST, which is also available as a standalone command-line program. The new engine...2377 days ago
- ...a method to detect the breakpoint reads directly from observing the differences between two (or more) NGS short reads samples. Slidesort-BPR is a command line tool implemented in C++.
2371 days ago
- ...abels, which are specified in a config file generated by the first run of Synima – and can be subsequently edited. Synima runs quickly on a command line to generate informative...
2351 days ago
- ...chosen/set.Note: For most programs in BBTools, you can add the parameter "config=foo.txt". Every line in "foo.txt" will be added as if it were a command-line parameter, regardless of...
2305 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
...in comparative genomics and phylogenetics. The new features include (i) building gene-based and supermatrix-based phylogenies using a single command, (ii) testing and visualizi...2280 days ago
d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.
...should able to take an R data frame with information about the relationships between members of a network and create full network graphs with one command.2234 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
...) using above technologies combinations of the above technologies (e.g. scaffold long reads with Hi-C reads) See below for specific examples of command line options and best practic...2195 days ago
minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
...laps.paf # PacBio read overlap ./minimap2 -x ava-ont reads.fa reads.fa > overlaps.paf # Nanopore read overlap # man page for detailed command line options man ./minimap2....2159 days ago
NanoPack: visualizing and processing long-read sequencing data
...d the MS Windows 10 subsystem for Linux and are available as a graphical user interface, a web service at http://nanoplot.bioinf.be and command line tools. https://ac...2108 days ago
