2488 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
RNAcon is a web-server for the prediction and classification of non-coding RNAs. It uses SVM-based model for the dis...the development of prediction model. The standalone version (Linux-based comma...2485 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public sequenc...ackground annotation engine for DFAST, which is also available as a standalone comma...2365 days ago
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2292 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
ETE v3, featuring numerous improvements in the underlying library of methods, and providing a novel set of standalon...ude (i) building gene-based and supermatrix-based phylogenies using a single comma...2268 days ago
d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.
Mike Bostock’s D3.js is great for creating interactive network graphs with JavaScript. The...tionships between members of a network and create full network graphs with one comma...2222 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to "just work...(e.g. scaffold long reads with Hi-C reads) See below for specific examples of comma...2183 days ago
minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
git clone https://github.com/lh3/minimap2 cd minimap2 && make # long sequences against a reference genome...reads.fa > overlaps.paf # Nanopore read overlap # man page for detailed comma...2147 days ago