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Results for "CompBio"

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• • Rahul Agarwal@raag

  

  Latest paper on comparison of mapping tools

  ...-ultra-3.1.0/ BFAST http://sourceforge.net/apps/mediawiki/bfast/index.php?title=Main_Page SHRiMP (for AB SOLiD color-space reads) http://compbio.cs.toronto.edu/shrimp/ Razer...

  3900 days ago

• • Priya Singh@priyasingh

  

  RACA: Reference-Assisted Chromosome Assembly

  ...onger chromosomal fragments using comparative genome information and paired-end reads. http://www.ncbi.nlm.nih.gov/pubmed/23307812 http://bioen-compbio.bioen.illinois.edu/RACA/

  2955 days ago

• • Surabhi Chaudhary@surabhi

  

  SCALCE

  ...ed specifically for the Illumina-generated FASTQ files, but supports any valid FASTQ with consistent read lengths.  More at http://sfu-compbio.github.io/scalce/

  2946 days ago

• • Poonam Mahapatra@poonam

  

  Scarpa

  Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that supports SAM format...

  2857 days ago

• • Jit@jit.aber

  

  PRISM

  ...at cs.toronto.edu. Additional information is available in the PRISM README file and PRISM_CTX README file.  http://compbio.cs.toronto.edu/prism/

  2707 days ago

• • Abhimanyu Singh@abhimanyu

  

  ChromHMM: Chromatin state discovery and characterization

  ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modif...

  2577 days ago

• • Poonam Mahapatra@poonam

  

  JPred4: A Protein Secondary Structure Prediction Server

  JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure prediction.

  2322 days ago

• • Jit@jit.aber

  

  Hapsembler: An Assembler for Highly Polymorphic Genomes

  Hapsembler is a haplotype-specific genome assembly toolkit that is designed for genomes that are rich in SNPs and other types of polymorphism. Hapsembler can be used to assemble reads from a variety of platforms including Illumina and Roche/454. http://compbio.cs.toronto.edu/hapsembler/

  2179 days ago

• • Jit@jit.aber

  

  CoLoRMap: Correcting Long Reads by Mapping short reads

  ...res well with existing hybrid correction methods.The source code of CoLoRMap is freely available for non-commercial use at https://github.com/sfu-compbio/colormap ehaghshe@sfu.ca or...

  2089 days ago