2541 days ago
2490 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...BLAST combines the accuracy and general applicability of BLAST with computational efficiency, accessibility, an...so that NGS data can be analyzed efficiently even when only modest computational resources are available. htt...2475 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approaches that play a critical ro...ches of functional genomics and of the potential and limitations of computational and experimental approaches t...2463 days ago
Opera: An optimal genome scaffolding program
...Gao, Wing-Kin Sung, Niranjan Nagarajan. Opera: reconstructing optimal genomic scaffolds with high-throughput paired-end sequences. Journal of Computational Biology, Sept. 2011, doi:10.1...2350 days ago
Computational Genomics: Applied Comparative Genomics
...s for students to be grounded in theory and leave the course empowered to conduct independent genomic analyses. We will study the leading computational and quantitative approaches f...2348 days ago
2348 days ago
Protein Subcellular Localization Prediction
...ion to a protein is an important step towards elucidating its interaction partners, function, and potential role(s) in the cellular machinery. Computational tools offer an attractive com...2256 days ago
2181 days ago
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
NextSV, a meta SV caller and a computational pipeline to perform SV calling from low coverage long-read sequencing data. NextSV integrates three aligners and three SV callers and generat...2098 days ago