Results for "Computational Biology works and writings"
Bookmarks
A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira M Hall. 2014. "LUMPY: a P...stic Framework for Structural Variant Discovery." Genome Biology...2804 days ago
Method in Comparative genomics !!
...gs for more than 90% of genes and intergenic regions across the...frame of functional proteins and developed a test for gene ide...f previously annotated genes) and refining the gene structure o...rom the current literature on computational motif discovery. Ba...enomics to further our understanding o...2727 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembl...nd/mate-pair/long reads to order and orient the intermediate conti...errors, improve efficiency etc.) and incorporated features that ar...refore encourage you to download and use our latest version: OPERA...thms is available at Genome Biology....2789 days ago
CGView - Circular Genome Viewer
GView is a Java package used to display and navigate bacterial genomes. GView is...genome maps for use in publications and websites, or as a visualizati...with the genome using a powerful pan-and-zoom interface, or GView can...to provide greater user interaction, and more...2779 days ago
- Development of cancer is driven by so...errations. Currently, several computational methods are available and are widely applied to detect...es. However, there is lack of computational methods that system...associated chromosomal breaks and identify genes that appear no...in R (www.cran.r-project.org) and is a...
2148 days ago
- Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation seq...red grid of cells, efficiency and speed have often proven to be...s (e.g., 100k+ rows) has been computationally infeasible on both desktop computers and web browsers. In addition to...
2747 days ago
- Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute. It provides basic data struct...nbsp;an all-purpose alignment tool for less diverged sequences; and ...
2709 days ago
Understanding Greedy Algorithms
Learning greedy algo for biologist. https://www.topcoder.com/community/data-science/data-scienc...gdon/ps/conference/super_biokdd.pdf https://ocw.mit.edu/courses/biology/7-91j-foundations-of-computational-and-systems-biology-...2695 days ago
- pyScaf orders contigs from genome assemblies utilising several ty...formation: paired-end (PE) and/or mate-pair libraries (NGS-bas...for CANPA on 4 CPUs and ~2 min for ARATH on 16 C...ly break the synteny. pyScaf works better with contigs than sc...which breaks synteny. pyScaf works ve...
2688 days ago
- Mauve is a system for constructing multiple gen...evolutionary events such as rearrangement and inversion. Multiple genome al...is for research into comparative genomics and the study of genome-wide evol...genome aligner should require only modest computat...
1965 days ago
