Results for "Computational Tools"
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SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by l...2627 days ago
Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMRT® Analysis suite. All packages are believed to be...2618 days ago
- Krona allows hierarchical data to be explored with zooming, multi-layered pi...s. Krona charts can be created using an Excel template or KronaTools, which includes support for several bioinformatics tools and raw data formats. The int...
2612 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visuali...m plots, or be imported from third-party binning tools and overlaid onto plots, such...ifferent methods can be compared side-by-side. gbtools reports summary statistics of...2607 days ago
- High throughput sequencing (HTS) technologies are being applied to a wide range of important topics in biology. However,...es the specific strengths and weaknesses of alternative HTS technologies, the compu...
2598 days ago
- Lifemap is an interactive tool to explore the WHOLE NCBI TAXONOMY. The concept used in Lifemap is similar to the one used in cartography with tools like Google Maps© or Ope...
2593 days ago
- DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-p...
2576 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we present a significant update to one of the tools in this domain called Enrichr...2576 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Ill...idated and compared favorably with other widely-used scaffolding and ordering tools using both simulated and real...2568 days ago
- This tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffolding tools to generate high quality asse...
2568 days ago
