Results for "Computational Tools"
Bio-Scripts
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently compile and execute bytecode for dynam................................no. auto::coverage - Are coverage analysis tools installed...Negative repeat c...1537 days ago
Long reads mapper bash script !
#!/bin/bash #only for LONG READS mapping #US...ation ready !" #Location of the tools samtools=/home/urbe/anaconda3/bin/samt...conda3/bin/bwa ngmlrLoc=/home/urbe/Tools/ngmlr/bin/ngmlr-0.2.3/ngmlr...les ready for visualization !" $samtools view -Sb $fileName.out.sam |...2123 days ago
- ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/transrate _...example commands with explanations ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/...
2123 days ago
Installing Porechop on Ubuntu !
➜ Tools git:(master) ✗ git clone https://github.com/rrwick/Porechop.git Cloning into.... Resolving deltas: 100% (869/869), done. Checking connectivity... done. ➜ Tools git:(master) ✗ cd Porechop...2106 days ago
- set -e echo "Running reapr version 1.0.18 pipeline:" echo "/home/urbe/Tools/Reapr_1.0.18/reapr WadinetaGa...Running fcdrate" /home/urbe/Tools/Reapr_1.0.18/reapr fcdrate ....Running facheck" /home/urbe/Tools/Reapr_1.0.18/reapr facheck Wa...
2099 days ago
- ➜ Tools git:(master) ✗ git clone http...export SWEETPATH=/home/urbe/Tools/nextsv/aligners_and_callers/P...e been written to: /home/urbe/Tools/nextsv/aligners_and_callers/S...s-2.3.0/src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamRa.../VCFPrinter.cpp.o /home/urbe/Tools/nextsv/aligners_and_callers/S...
2099 days ago
- ...Usage template for Spark tools (will NOT work on non-Spark t...Tools that process sequencing machi...rnal pileup to a reference Samtools mpileup CheckTerminatorB...Tools that analyze and manipulate F...
2076 days ago
- ➜ upgrade_oh_my_zsh Updating Oh My Zsh remote: Counting objects: 484, done. remote: C...gins/ubuntu/ubuntu.plugin.zsh | 2 +- plugins/urltools/urltools.plugin.zsh...
2075 days ago
Installing pb-assembly on Linux !
...MCL/14.137-foss-2016a cctools/5.2.3...SAMtools/1.3.1-foss-2016a HDF5/1.8.16...n@hmem00 ~]$ conda install samtools Fetching package metadata .....py27_1 conda-forge samtools 1.9...2035 days ago
- #http://www.nupack.org/downloads/source ➜ tools git:(master) ✗ cd nupack3.0.6...ntering directory '/home/urbe/Tools/nupack3.0.6/nupack3.0.6/src/t...Leaving directory '/home/urbe/Tools/nupack3.0.6/nupack3.0.6/src/t...Leaving directory '/home/urbe/Tools/nupack3.0.6/nupack3.0.6/src/t...
2027 days ago
