2630 days ago
Prokka: tool for the rapid annotation of prokaryotic genomes
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core comput...2625 days ago
2597 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those inte...malian genomes are currently sequenced to high precision, our theoretical analyses and comput...2552 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assem...anopore sequencing. The pipeline can run on a computing cluster as well as on a laptop comput...2547 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite that allows users...use web-based interface:Access your data at any time from any comp...ic Next-Gen Data..'). Extensibility:Algorithm developers and comput...2503 days ago
2498 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing te...ations. To enable these applications, the bioinformatics community will need to design and build a suite of tools sp...2362 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity sear...l advantage of recent multi-core personal compu...high-performance sequence comparison tool desi...M footprint, Ready to be used on desktop computer, cluster, cloud as well as...2355 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads that r...sets. Based on a database of given genomes, the program allows the user to design a metagenome by specifyi...2352 days ago