Results for "Computer Theory"
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Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop comput...2719 days ago
- PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and ca...millions of paired end reads within a couple of minutes on a standard desktop comput...
2708 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chromosomal regions and subsequently align these regions using genes a...
2705 days ago
- Cgaln (Coarse grained alignment) is a program designed to align a pair of whole genomic sequences of not only bacteria but also entire chromosomes of vertebrates on a nominal desktop comput...
2643 days ago
- Circos plot tool (J-Circos) that is an interactive visualization tool that can plot Circos figures, as well as being...ts using mouse hover display and zoom in/out functions. J-Circos uses the Java comput...
2648 days ago
- Collectively, the bedtools utilities are a swiss-army knife of tools for a wi...tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example,&n...
2641 days ago
Laj: viewing and manipulating the output from pairwise alignment programs
Laj is a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can display...der to provide a graphical user interface that is portable across a variety of comput...2636 days ago
Prokka: tool for the rapid annotation of prokaryotic genomes
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core comput...2631 days ago
- This website and accompaning documents are intended as a tool to help researchers dealing with non-model organisms ac...ics skills. It covers all steps from tissue collection, sample preparation and comput...
2604 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those intervals from their observed...enomes are currently sequenced to high precision, our theoretical analyses and comput...2558 days ago
