2617 days ago
Prokka: tool for the rapid annotation of prokaryotic genomes
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core comput...2613 days ago
2585 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those intervals...alian genomes are currently sequenced to high precision, our theoretical analyses and comput...2540 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies...nopore sequencing. The pipeline can run on a computing cluster as well as on a laptop comput...2535 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite that allows users to analyse data produced u...b-based interface:Access your data at any time from any computer w...t-Gen Data..'). Extensibility:Algorithm developers and comput...2491 days ago
2486 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing techno...ions. To enable these applications, the bioinformatics community will need to design and build a suite of tools sp...2350 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity...antage of recent multi-core personal computers without requiring any additi...performance sequence comparison tool designed t...tprint, Ready to be used on desktop computer, cluster, cloud as well as...2343 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads that refle...ts. Based on a database of given genomes, the program allows the user to design a metagenome by specifyi...2339 days ago