Results for "Conserve Synteny"
Bio-Scripts
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here...2132 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
#Need to download i-adhore-3.0.01.tar.gz from https://wdiceryfd4rjn74bjhhtz2k5di--bioinformatics-psb-ugent-be.translate.goog/webtools/i-adhore/licensing/ #Follow th...1195 days ago
Identify genome-wide synteny with LASTZ alignment
#This is the walkstrough how to identifiy genome-wide synteny markers based on LASTZ alignment. Step...ep 3: Get syntenic markers perl Maf2rawsynteny.pl chr1.chain.filter.tnet.syn...maf target.AAChr1 query.FFChr1 perl Get_synteny.pl -i chr1.chain.filter.tnet....509 days ago
