Results for "Conserve Synteny"
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pyScaf orders contigs from genome assemblies...mode) long reads (NGS-based mode) synteny to the genome of some related...In reference-based mode, pyScaf uses synteny to the genome of closely rela...any redundancy will likely break the synteny. pyScaf works better with co...2686 days ago
- ...regions using genes as anchors. This is the toolset for generating the synteny correspondences in Plant...n Database. It is intended as an easy-to-use and quick way to identify conserved gene arrays both within the...
2683 days ago
- A tool for converting for recovering synteny blocks from multiple alignment (in MAF fromat) This tool is a standalone version of Ragout module [http://fenderglass.github./Ragout]
2536 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based appl...tructing, visualizing and browsing synteny blocks. With Synteny Portal, users can easily (i)...high-quality images, (iii) browse synteny blocks with genetic informati...ing limitations of existing tools. Synteny Portal is freely available at...2530 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
...kes as an input a set of genomes represented as sequences of genes (or synteny blocks) and produces such sequ...ified completely or partially, in the latter case MGRA can reconstruct conserved ancestral regions (CARs) of...2468 days ago
- Typically in comparative genomics, we can identify anchors, chain them into syntenic blocks and interpret these blocks as derived from a common descent. However, when c...
2462 days ago
orthodotter: Synteny plots (oxford grid)
orthodotter -h -------------------------------------------------------------------------------- orthodotter - Plot orthologous genes on an oxford grid. -f <...2453 days ago
- Synteny Imaging tool (Synima) written in Perl, which uses the graphical features of R....BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview of genome-wide synteny in PDF. Each of these program...
2329 days ago
kraken: A universal genomic coordinate translator for comparative genomics
If you planning on conducting a study involving dozens of large genomes, then you do not have to run all pairwise synteny alignments .. simply try kraken: A universal genomic coordinate translator for comparative genomics2333 days ago
xmatchview: smith-waterman alignment visualization
xmatchview and xmatchview-conifer are imaging tools for comparing the synteny between DNA sequences. It allows user...2312 days ago
