HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Since version 2.7.0, HiC-Pro supports the main Hi-C protocol...2358 days ago
TeachEnG: Teaching Engine for Genomics
...n includes interactive modules for sequence alignment and phylogenetic tree reconstruction algorithms, with accompanying video tutorials. Please contact us via email (knoweng@illinoi...2350 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
...analysis platform to facilitate visually annotating and exploring the 3D physical architecture of genomes. Delta takes Hi-C or ChIA-PET contact matrix as input and predicts...2343 days ago
ECTOOLS: Long Read Correction and other Correction tools
...oose collection of scripts. To run the correctionroutine see the section below. Descriptions of the other scriptsare at the bottom of this file. Contact: gurtowsk@cshl.edu In short,...2327 days ago
Circoletto: visualizing sequence similarity with Circos
...rsion and downloadable software package for offline use (source code in PERL) freely available at http://bat.ina.certh.gr/tools/circoletto/ Contact:ndarz@certh.gr2292 days ago
HiGlass: a tool for exploring genomic contact matrices and tracks.
HiGlass is a tool for exploring genomic contact matrices and tracks. Please take a look at the examples and...scription of the ways that it can be configured to explore and compare contact matrices. To load private dat...2170 days ago
LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
LACHESIS is method that exploits contact probability map data (e.g. from Hi-C) for chromosome-scale de novo genome assembly. Further information about LACHESIS, including s...2198 days ago
SALSA: A tool to scaffold long read assemblies with Hi-C
...for scaffolding. Ghurye, J., Pop, M., Koren, S., Bickhart, D., & Chin, C. S. (2017). Scaffolding of long read assemblies using long range contact information. BMC genomics, 18...2166 days ago
1982 days ago
GenoViz: Visualization software for genomics
...te new releases of IGB as compiled code (igb.zip) you can use to run IGB on your computer. If you have questions, feel free to get in touch. Contact project head Ann Loraine (alo...1965 days ago