Results for "Contigs"
Bookmarks
Scaffolding of a bacterial genome using MinION nanopore sequencing
...contain repeated DNA elements that are longer than the read lengths achievable with typical sequencers, so the genomic order of several generated contigs cannot be easily resolved. A...3218 days ago
- HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo evaluates candidate primary assemblies using BUS...
1086 days ago
RNA-Seq De novo Assembly Using Trinity
...ipts for a dominant isoform, but then reports just the unique portions of alternatively spliced transcripts. Chrysalis clusters the Inchworm contigs into clusters and constructs...2959 days ago
- ...Ion Torrent Solexa (Illumina) sequencing (in development) Pacific Biosciences sequencing into contiguous sequences (called contigs). One can use the sequences o...
2945 days ago
- ...a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often uninten...y of GC content, coverage, and taxonomic annotation for collections of contigs with a view to separating out...
2876 days ago
- ...ation for genome scaffolding of pre-assembled contigs using mate-pair data. It also...and correction of chimerae, the estimation of contigs copy number and produces valu...d_extender, which works with big, unambiguous contigs, or when they run out, single...
2847 days ago
- ...de novo assemblies consist in many pieces of contiguous sequence (contigs) arranged in thousands of sca...lize transcript evidence that suggests adjacency between scaffolds and contigs. Software requirements BLAT...
2805 days ago
- ...genomes.Program takes as input assembled contigs, paired-end and/or mate...h total size smaller than the input contigs. In addition, Redundans will...etection and selectively removal of redundant contigs from an initial de novo&...
2797 days ago
OPERA : Optimal Paired-End Read Assembler
...m (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from paired-end/mate-pair/long reads to order and orient the intermediate contigs/scaffolds assembled in a geno...2789 days ago
- ...string graph assembler (Simpson and Durbin, 2010 and 2012) and has a similar workflow.As a typical de novo assembler, fermi tends to produce contigs with slightly longer N50...
2789 days ago
