Results for "Contigs"
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...ect assembly (e.g., mate-pairs are aligned at the correct distance from each other in the assembly, the depth of coverage is fairly uniform along contigs, etc.). The violations of the...2777 days ago
- ...-dimensional views of most genome browsers showing only reference coordinates. Instead, structural variations captured by long reads or assembled contigs often need more context to un...
2748 days ago
- ...ads used in the experiment. Our approach applies de novo assembly software to experimental reads and so-called pseudoreads and uses the resulting contigs to generate a modified refere...
2713 days ago
- ...all the assemblies of the partition (using velvet with kmer value of 31). 5. Finaly, re-assembling the whole dataset with the merged contigs or the combined contigs, using a given kmer size. ht...
2709 days ago
- ...t-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contigs. Minia produces results of si...
2700 days ago
CISA: Contig Integrator for Sequence Assembly
...ploy various state-of-the-art assemblers to generate different sets of contigs for bacterial genomes. A tool...A, has been developed to integrate the assemblies into a hybrid set of contigs, resulting in assemblies of s...2693 days ago
- ...caffolds from NGS data (reads and contigs). The tool is written in Pyth...e one needs to first map reads to contigs (instead of providing .sam fi...s produced after mapping reads to contigs and the resulting scaffolds f...p; -t) Bundle threshold. Pairs of contigs supported by number of read p...
2695 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
...formed better than de novo assemblers and contig integration software. Produces more contiguous assemblies, higher N50 values and lower number of contigs. More at https://sourceforge...2693 days ago
GARM:Genome Assembly, Reconciliation and Merging
...n Debian, Ubuntu, Fedora and BioLinux distributions. The method merges contigs or scaffolds from different a...sions or extensions (CE) problems in the assemblies can be per-formed; contigs are joined back into scaffold...2689 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Descr...t can accept any number of sequence (FASTA) files containing assembled contigs of any length in Multi-FASTA...2689 days ago
