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Results for "Convert"

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• • Abhimanyu Singh@abhimanyu

  

  fastq to fasta convertor $ sed -n '1~4s/^@/>/p;2~4p' test.fastq > test.fasta #Convert #Fasta #Fastq #fa #fq

  Tags: Convert, Fasta, Fastq, fa, fq

  2544 days ago

• • Jit@jit.aber

  

  MiraConvert http://manpages.ubuntu.com/manpages/xenial/man1/miraconvert.1.html #MIRA #Assembler #Convert

  Tags: MIRA, Assembler, Convert

  2698 days ago

• • Jit@jit.aber

  

  Convert a SAM file to tab-delimited alignment coordinates https://gist.github.com/sjackman/7016520 #SAM #BAM #Convert #Tab

  Tags: SAM, BAM, Convert, Tab

  2614 days ago

• • Jit@jit.aber

  

  Convert MAF file format http://last.cbrc.jp/doc/maf-convert.html #MAF #Convert #Format

  Tags: MAF, Convert, Format

  2545 days ago

• • Jit@jit.aber

  

  MAF2Synteny https://github.com/fenderglass/maf2synteny #Convert #Synteny #MAF #Ragout

  Tags: Convert, Synteny, MAF, Ragout

  2545 days ago

• • Rahul Nayak@rahul

  

  Convert masked genome to N letters. $ perl -pe '/^[^>]/ and $_=~ s/[a-z]/N/g' genomic.fna > genomic.N-masked.fna #Genome #Masked #N #Convert

  Tags: Genome, Masked, N, Convert

  2516 days ago

• • Rahul Nayak@rahul

  

  #Convert #fasta file to uppercase/lowercase, without altering the annotation line $ awk '{ if ($0 !~ />/) {print toupper($0)} else {print $0} }' name.fasta

  Tags: Convert, fasta

  2228 days ago

• • Jit@jit.aber

  

  Convert lowercase letter to N:$ sed -e '/^>/! s/[[:lower:]]/N/g' in.fasta > out.fasta #Convert #Lowercase #Fasta #N

  Tags: Convert, Lowercase, Fasta, N

  2212 days ago

• • Poonam Mahapatra@poonam

  

  Convert fasta to 2bit $ faToTwoBit myAssembly.fa myAssembly.2bit #Fasta #2bit #Convert

  Tags: Fasta, 2bit, Convert

  2175 days ago

• • Poonam Mahapatra@poonam

  

  Convert 2bit to psl $ blat myAssembly.2bit -oneOff=0 -noHead myQueryContigSeqs.fa myHits.psl #Convert #psl #2bit #blat

  Tags: Convert, psl, 2bit, blat

  2175 days ago

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