Next generation sequencing in R or bioconductor environment
...packages exist for many common genomes, and can be created to represent custom genomes. See the "How to forg...nriched Gene Ontology (GO) terms, find the nearest gene, exon, miRNA or custom features such as most conserv...3633 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ina) and text files Supports custom genome builds and annotation...each event have to be used to custom-filter the list in order to l...notation using public data or custom tracks, automated primer desi..., gff, CASAVA, VCF, GATK bed, custom Output: “default outpu...2917 days ago
Bioinformatics Web Application Development with Perl
...ecification (as exemplified by Plack) describes a strategy for building Perl web apps independent of server and with the possibility to share custom processing behaviors. In oth...2330 days ago
PerlOneLiner for Bioinformatician
...mber all lines, but print line numbers only for lines that match a patternperl -pe '$_ = "$. $_" if /regex/' # Number all lines in a file using a custom format (emulate cat -n)perl -...2311 days ago