LoRDEC: a hybrid error correction program for long, PacBio reads
...a usual computing server, and even works on desktop/laptop computers. It adopts a novel graph based approach: it builds a succinct De Bruijn Graph (DBG) representing the short read...2598 days ago
WGS Celera Assembler version 8.3rc2
...urbe urbe 526K Apr 10 11:41 tigStore-rwxrwxr-x 1 urbe urbe 35K Apr 10 11:41 tracearchiveToCA-rwxrwxr-x 1 urbe urbe 35K Apr 10 11:41 tracedb-to-frg.pl-rwxrwxr-x 1 urbe ur...2598 days ago
Metagenomics assembly workshop !!
...ypical steps of metagenome assembly and binning. The Tutorial Data Set FastQC Quality Control Assembly Velvet Assembly MEGAHIT Assembly IDBA-UD Assembly Ray Assembly...2590 days ago
2589 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...that is capable of processing a larger data volume. You can find a more detailed description of the new version of the pipeline in NCBI Handbook chapter. NCBI's annotation...2562 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBa...database and CAT. All data in dbCAN are generated based on the...compared with CAZy database and CAT: dbCAN provides the capability of...roteins in all sequenced genomes; dbCAN provides the most complete...2549 days ago
eQuant : energy-based quality assessment of protein
...utilizes a coarse-grained energy model. The overall quality is calculated as well as the reliability of individual residues. You can submit single PDB files or archives containing...2522 days ago
2521 days ago
Omega2: metagenome assembly pipeline
...verlap graph and then merged to contigs and scaffolds using mate-pair information. In comparison with three de Bruijn graph assemblers (SOAPdenovo, IDBA-UD and MetaVelvet), Omega pr...2507 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
...t informative. We hope that IONiseR will provide a framework for visualisation of metrics that we haven’t thought of, and welcome feedback at mike.smith@embl.de...2371 days ago