Results for "DNA"
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...s to find a minimal set ofunitigs to represent all the information in raw reads.Fermi follows the overlap-layout-consensus paradigm and uses the FM-DNA-index (FMD-index) as the...2788 days ago
- DECIPHER is a software toolset that can be used to maintain, analyze, and decipher large amounts of DNA sequence data. To install DECIPHER, see the Downloads page. To begin using DE...
2767 days ago
- Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 35 wall minutes), or 8 mammals in 21 C...
2767 days ago
- ...identify genes recurrently affected by the genomic location of chromosomal CNA-associated breaks by a genome-wide approach, which can be applied to DNA copy number data obtained by...
2146 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharacterized environments that may contain...a which uses interpolated Markov models (IMMs) to taxonomically classify DNA sequences, can accurately cla...
2757 days ago
- HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for ge...ormatics tools in order to extract target sequences from high-throughput DNA sequencing reads. Targeted b...
2732 days ago
- ...ed on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads. More at htt...
2698 days ago
- ...sis is a multifaceted process. EAGER encompasses both state-of-the-art tools for each step as well as new complementary tools tailored for ancient DNA data within a single integrat...
2695 days ago
- ...sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indica...each aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts...
2686 days ago
Finding Patterns in Biological Sequences
In this report we provide an overview of known techniques for discovery of patterns of biological sequences (DNA and proteins). We also provide biological motivation, and methods of...2683 days ago
