2639 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGc...ing function which accounts for the distance between neighboring genes on each DNA molecu...2639 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabili...ons. In the process, they report findings regarding errors in sequencing. The method can be used for whole genome shotgun (WGS) sequencing data. They also show applicab...2632 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...e Molecular Identifiers (UMIs) for DNA-, RNA-, and small-RNA-Seq. S...cent challenges in next generation sequencing (NGS). The first them...olecular Identifiers, or UMIs, for DNA-, RNA- and small-RNA-Seq. UMI...grade FFPE samples, UMI support in DNA-Seq enables the detection of somatic...2392 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation disco...%2Fjournal.pone.0047768PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS read...2629 days ago
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2613 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting coverage (sequencing depth) and GC values of conti...2602 days ago
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2595 days ago