2506 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...roteins, or the nucleotide sequences of different pieces of DNA. The Basic Local Alignment Se...atics packages. However, with the advent of Next Generation Sequencing (NGS) and the development of new sequencing techniques, the utility of tr...2491 days ago
2490 days ago
Web Apollo: a web-based genomic annotation editing platform
Web Apollo is the first instantaneous, collaborative genomic anno...f the natural consequences following from current advances in sequencing technology is that there are more and more researchers sequencing new genomes. These researcher...2488 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often.... However, there is enough information in the reads to correct most of the sequencing errors, thus making subsequen...2385 days ago
2373 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA sequences an importa...2370 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2...t seeds, and outputs a graph and scaffold structures. Tulipbulb adds long read sequencing data to these. https...2370 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB por...ize, summarize and visualize MinION nanopore sequencing data. As a package for R, poR...2370 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
This package is intended to provide tools for the quality assessment of data produ...the statistics that we think will be useful for this task. However, nanopore sequencing is an emerging and rapidly de...2370 days ago