Results for "DNA sequencing"
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methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its varian...an also handle whole-genome bisulfite sequencing data if proper input format i...2885 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to vi...onal Biology special issue : Quality assessment and control of high-throughput sequencing data). It contains bash/perl...
2875 days ago
- Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultaneous display...
2874 days ago
- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication: L....
2158 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configuration and genome size, then s...2158 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-free methods analyse unprocessed sequencing data without relying on prior...2872 days ago
- SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next-gen, next-generation, sequencing, bowtie, sam, bam, primer, tu...
2865 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads f...INDEL) polymorphisms, and simulate reads with uniform substitution sequencing errors. It does not generate INDEL sequencing errors, but this can be partl...
2865 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you through the steps necessary for running _A5-miseq_. Point to note: There...
2809 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers) at dis...gene expression levels. Genomic technologies for mapping interactions between DNA region...
2861 days ago
