Results for "DU"
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Method in Comparative genomics !!
...nd intergenic regions across the four species despite the large number of duplicated genes in the yeast ge...specificity. We used this test to revisit the genome of S. cerevisiae, reducing the overall gene count by...2746 days ago
- Background. Next-generation sequencing technologies are now producing multiple times the genome size in to...rmation to reconstruct at least some of the differences between the individual genome studied in the exper...
2731 days ago
- ...r based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contigs. Minia produces results of similar contigu...
2718 days ago
- ...file manipulations are supported. See below for a full list of the subcommands available and a brief description of their purpose. Most of the individual subcommands will take eithe...
2718 days ago
- ...ly estimate the insert size of a paired-end library through the use of Bowtie, the primary parameters of velvet, and the process involved in producing a de novo assem...
2717 days ago
- ...etect small insertions and abitrary size deletions, inversions and tandom duplications with the direction...bsp;The authors may be contacted via e-mail at: prism at cs.toronto.edu. Additional information...
2716 days ago
Understanding Greedy Algorithms
...//learninglover.com/examples.php?id=59 http://www.cs.rpi.edu/~magdon/ps/conference/super_biokdd.pdf https://ocw.mit.edu/courses/biology/7-91j-foundat...w/Services/Class/files/20150612449.pdf http://www.cs.jhu.edu/~langmea/resources/lecture_no...2714 days ago
- ...h is a novel scaffolding tool based on Maximum-Weight Matching able to produce high-quality scaffolds from...the directory where ScaffMatch files are stored. These are .sam files produced after mapping reads to con...
2713 days ago
CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de novo assembly of genomes, however, no individual assembler guarantees the optimal assembly for diverse species. Op...2711 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...nsuming process for most NGS alignment programs. Large insert sizes, introduction of library preparation p...sing mate pair sequencing. Availability: http://bioinformaticstools.mayo.edu/research/bima/ Contact: vasma...2712 days ago
