Results for "DU"

Bio-Scripts

  • Download with Snakemake !

    ...et al, 2016 study rule download_all: input: expand("rnaseq/raw_data/{sample}.fq.gz", sample=SAMPLES) # rule to download each individual file specified in sample_li...

    1518 days ago

  • Installing Busco version 4.0.6

    ...py_1 299 KB bioconda findutils-4.6.0 | h14...pl526_0 30 KB bioconda perl-module-build-0.4224 | p...bioconda/noarch::dendropy-4.4.0-py_1 findutils conda-forge/linu...

    1455 days ago

  • Downloading GATK !

    ...t-stream Resolving github-production-release-asset-2e65be.s3....l) Denoises read counts to produce denoised copy ratios D...mmaryMetrics (Picard) Produces a summary of alignment met...a SAM/BAM/CRAM file MarkDuplicates (Picard)...

    2077 days ago

  • Update zsh on Ubuntu !

    ...2 +- themes/bira.zsh-theme | 2 +- themes/clean.zsh-theme | 2 +- themes/duellj.zsh-theme...

    2077 days ago

  • Installing pb-assembly on Linux !

    ...module-cvs cURL/7.47.0-foss-2016a...module-info cURL/7.49.1-foss-2016...sw/arch/easybuild//default//modules/all ----------------------...use # # in diagnostic procedures, intended only for command...

    2036 days ago

  • Test bp-assembly !

    (denovo_asm) [jnarayan@hmem00 ~]$ git clone https://github.com/cdunn2001/git-sym.git fatal: destination p...tory. (denovo_asm) [jnarayan@hmem00 ~]$ git clone https://github.com/pb-cdunn/FALCON-examples.git Initia...

    2036 days ago

  • Install HTSLIB on Ubuntu !

    ...sponse... 302 Found Location: https://github-production-release-asset-2e65be.s3....ing] --2018-10-25 13:36:41-- https://github-production-release-asset-2e65be.s3....=application%2Foctet-stream Resolving github-production-release-asset-2e65be.s3....

    2021 days ago

  • Installing Platypus on Ubuntu !

    ...home/urbe/Tools/Platypus/src/cython/arrays.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: cython/arra...ome/urbe/Tools/Platypus/src/cython/cwindow.pxd tree = Parsing.p_module(s, pxd, full_module_name)...

    2021 days ago

  • Script to Plot the Coverage

    ...the coverage script chr=$1 start=$2 end=$3 samtools depth deduped_MA605.bam > deduped_MA605.coverage awk '$1..._MA605.coverage > chr1_MA605.coverage #awk '$1 == 2 {print $0}' deduped_MA605.coverage > chr2_MA60...

    2006 days ago

  • Setting up falconUnzip conda environments for genome assembly !

    ..., intended for Research Use Only and not for use # # in diagnostic procedures, intended only for command..., intended for Research Use Only and not for use # # in diagnostic procedures, intended only for command...

    1992 days ago