Results for "DU"
Bio-Scripts
Install Php on Ubuntu / Apache server !
#Installing PHP 7.2 with Apache #If you are using Apache as your web server to install PHP and Apache PHP module run the following command: sudo apt install php libapache2-mod-php #Once the packages are installed restart the Apache service: sudo systemctl restart apache2933 days ago
Bash script to simulate a genome !
...n2=illumina2.fastq.gz out=illumina.int.fastq 2>/dev/null # use KmerGenie 1.7051 to get an idea of k-mer with that produces longest N50 # http://kmergenie.bx.psu.edu/ mkdir -p /genetics/elbers/t...932 days ago
- ...In Awk Awk’s built-in variables include the field variables—$1, $2, $3, and so on ($0 is the entire line) — that break a line of text into individual words or pieces called fiel...
909 days ago
Run Pango on your multifasta file !
...1.0.1. This might lead to breaking code or invalid results. Use at your own risk. For more info please refer to: https://scikit-learn.org/stable/modules/model_persistence.html#sec...901 days ago
Installing SEVA environment in Conda !
...#################### | 100% bioconductor-iranges | 2.4 MB | ###...#################### | 100% bioconductor-biocins | 62 KB | ###...#################### | 100% bioconductor-xvector | 724 KB | ###...#################### | 100% bioconductor-biostri | 13.8 MB | ###...852 days ago
Install Install Gffcompare on Ubuntu / Linux
...ith the linux we’re using so we will just download, extract, and make a symlink. # download and extract cd ~/workspace/bin wget http://ccb.jhu.edu/software/stringtie/dl/gffcomp...837 days ago
- ...ch interpretive programming language originally released in 1995. It is heavily used in the bioinformatics community largely due to numerous R libraries available on bioconductor. It takes a several minut...
837 days ago
Install StringTie on ubuntu / Linux !
.... Like with our other programs we also make a symlink to make it easier to find. # download and extract cd ~/workspace/bin wget http://ccb.jhu.edu/software/stringtie/dl/stringt...837 days ago
Commands to get the detail of disk usage on Linux !
#A simplistic approach would be du -shc /home/* du -shc /home/jnarayan #To sort it: du -smc /home/* | sort -n #There is also a wellknown Perl script that has the option of mailing disk usage reports per user: durep http://www.ubuntugeek.com/create-disk-usage-reports-with-durep.html829 days ago
Command line to print disk usage on Linux terminal !
#Print disk usage - perl du -h |perl -e'%h=map{/.\s/;99**(ord$&&7)-$`,$_}`du -h`;die@h{sort%h}' #Bash du -k * | sort -nr | cut -f2 | xargs -d '\n' du -sh #Base du -scBM | sort -n #More du -s * | sort -rn | cut -f2- | xargs -d "\n" du -sh828 days ago
