Results for "Data"
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HiCdat: a fast and easy-to-use Hi-C data analysis tool HiCdat is easy-to-use and provides solutions starting from aligned reads up to in-depth analyses. Importantly, HiCdat is focus...2998 days ago
- ...luding working with gene annotation, collecting data scores from a variety of mode...n gene annotation formats and the collection of data from multiple data files. The...ToolBox package includes scripts for setting up databases of annotation, collectin...
2991 days ago
- ...ilding loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the pur...
2986 days ago
Ensembl comparative genomics resources
...ve and reproducible analysis of chordate genome data. Ensembl computes pairwise an...ave a consistent informatics infrastructure and data presentation across all suppo...and pipelines to produce reference comparative data and make it freely available....2981 days ago
- This software is designed to identify both simple and complex rearrangements from paired-end sequencing data. Users could ran it easily by just alling SVelter.py with prope...
2980 days ago
- Machine Learning in Python Simple and efficient tools for data mining and data analysis Accessible to everybody, and reusable in various contexts Built on NumPy, SciPy, and matplotlib Open source, commercially usable - BSD license More at http://scikit-learn.org/stable/index.html
2980 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA read...Indicate the reliability of each aligned column. Use sequence quality data properly. Compare DNA to pro...
2972 days ago
- GA4GH Data Working Group Led by David Haussler (UCSC) and Richard Durbin (Sanger Institute), the Data Working Group (DWG) of the Gl...acy respecting and interoperable sharing of Genomic data. More at http://ga4gh.o...
2960 days ago
RNA-Seq De novo Assembly Using Trinity
...ion of transcriptomes from RNA-seq data. Trinity combines three indep...s. Trinity partitions the sequence data into many individual de Bruij...Inchworm assembles the RNA-seq data into the unique sequences of...ation directory. Assemble RNA-Seq data like so: Trinity --seqType...2958 days ago
