2945 days ago
2968 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_reverse...2959 days ago
2955 days ago
2948 days ago
2948 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowl...oring sequencing files (your own data or from public sources) Chec...SAM/BAM alignment files Visualizing data in a genome browser RNA-Se...ng R/Bioconductor General Tips for Data An...2948 days ago
MEDEA: Comparative Genomic Visualization with Adobe Flash
As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly importan...pot outliers is necessary in such large and complex data se...2947 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data se...2945 days ago
2934 days ago