Results for "Draft"
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Pilon is a software tool which can be used to: Automatically improve draft assemblies Find variation among strains, including large event detection Pilon requires as input a F...3022 days ago
BLAST Ring Image Generator (BRIG)
...a simple GUI. Contig boundaries and read coverage can be displayed for draft genomes; customized graphs an...absence, truncation or sequence variation in a set of complete genomes, draft genomes or even raw, unassemb...2787 days ago
- ...ford Nanopore Technologies Ltd. It can be used to scaffold high-quality draft genome assemblies with any long sequences (eg. ONT reads, PacBio reads, another draft genomes, etc) Paper at ...
2752 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...c mode and analyze sequences even when the organism is unknown. Ease of Use: Prodigal can be run in one step on a single genomic sequence or on a draft genome containing many sequen...2698 days ago
- ...a simple GUI. Contig boundaries and read coverage can be displayed for draft genomes; customized graphs an...absence, truncation or sequence variation in a set of complete genomes, draft genomes or even raw, unassemb...
2648 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
...s PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. ----- PBHoney -...2637 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end...nations, for the users to cross-check before constructing the consensus draft. The CLA pipeline was designe...2570 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of pr...r information. It is able to close gaps left open by the assembler in a draft genome, even when using the s...2563 days ago
CABOG: Celera Assembler with Best Overlap Graph
...an. CABOG is an extension of the Celera Assembler software that was originally developed at Celera for the 2001 publication of the first draft human genome sequence. The so...2560 days ago
- The process of finishing a genome and moving it from a draft stage (the result of seque...er, the process of assembling the genomes is more challenging and often draft genomes are fragmented into h...
2555 days ago
