Shouji: a fast and efficient pre-alignment filter for sequence alignment
...es. We introduce Shouji, a highly parallel and accurate pre-alignment filter that remarkably reduces the need for computationally-costly dynamic programming algorithms. The f...1666 days ago
Sequanix: a dynamic graphical interface for Snakemake workflows
A Python library dedicated to NGS analysis (e.g., tools to visualise standard NGS formats). A set of pipelines dedicated to NGS in the form of Snakefiles (Makefile-l...1566 days ago
The wavefront alignment (WFA) algorithm
...p-affine algorithm that takes advantage ofhomologous regions between the sequences to accelerate the alignment process. As opposed to traditional dynamic programming algorithms that r...1429 days ago
1229 days ago
odgi: optimized dynamic genome/graph implementation
odgi provides an efficient and succinct dynamic DNA sequence graph model, as well as a host of algorith...sp;pangenomes with minimal overheads. odgi implements a dynamic data structure that leveraged...845 days ago