Results for "Edges"
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...to do this all-vs-all comparison with alignments being performed in protein space. Construct a graph with each vertex corresponding to a exon and edges between vertices whose corres...2668 days ago
- ...g networks. Nodes are mapped to and positioned on radially distributed linear axes — this mapping is based on network structural properties. Edges are drawn as curved links. Si...
2658 days ago
Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph of reads was simplified by removing transitive edges and trimming short branches. Unitigs were...2514 days ago
- ...nih.gov/pubmed/26109056), and recursive clipping of mismatches near the edges of the reads, which avoids ac...s and is needed to distinguish short indels from substitutions near the edges.
2345 days ago
MIX: Combining multiple assemblies from NGS data
...an extension graph where vertices represent extremities of contigs and edges represent existing alignments between these extremities. These alignment edges are used for contig extension...2212 days ago
- ...ors, haplotype variations, or putative RNA editing events. The primary output of our tool is a FASTA file containing putative exons. Further, exon edges are interrogated for alternat...
2156 days ago
- ...nih.gov/pubmed/26109056), and recursive clipping of mismatches near the edges of the reads, which avoids ac...s and is needed to distinguish short indels from substitutions near the edges.
2114 days ago
visNetwork: an R package for network visualization, using vis.js javascript library
...ures for R : easy to use custom shapes, styles, colors, sizes, … works smooth on any modern browser for up to a few thousand nodes and edges interactivity controls (high...1966 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
...ransitive links (single linkage) with alignment coverage constraints. SiLiX adopts a graph-theoretical framework to interpret similarity pairs as edges of a network. A very efficien...1994 days ago
SDA: Long-read sequence and assembly of segmental duplications
...om/mvollger/SDA) constructs graphs in which paralogous sequence variants define the nodes and long-read sequences provide attraction and repulsion edges, enabling the partition and a...1911 days ago
