Results for "End of Evolution"
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SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next-gen, next-generation, sequencing, bow...ata sets are provided. Terms in bold are also explained in the glossary at the end of th...2886 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for discovering and genotyping structura...variations in sequencing depth, read lengths and mixtures of paired and single-end reads...
2811 days ago
VAGUE:Velvet Assembler Graphical Front End
VAGUE is a vague acronym for "Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo assembler. The command line version of Velvet can be complicated for b...2640 days ago
- Redundans pipeline assists an assembly of heterozygous genomes.Prog...ut assembled contigs, paired-end and/or mate pairs sequencing...ining of genome fragments using paired-end and/or mate-pairs reads gap...4 or Sanger) and library types (paired-end, mate...
2816 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.w...Sequence_assembly). It uses information from paired-end/mate-pair/long reads to order...affolds with the information provided by the paired-end/mate-...2808 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina shor...lar workflow.As a typical de novo assembler, fermi tends to produce contigs with slig...rovides a tool to fix misassemblies by using paired-end reads...
2808 days ago
- The Sybil software package provides a primarily web-based front-end to comparative genome datasets warehoused in a chado relational databa...level technical details about the overall architecture and external dependencies...
2810 days ago
- ...remely important role in the current genomic revolution to inspect and understand variants, expression patterns, evolutionary changes, and a number of o...SAM and BAM files with long, short, or paired-end reads, Ribbon can also load coordin...
2766 days ago
- Summary: GenomeScope is an open-source web tool to rapidly estimate th...from unprocessed short reads. These features are essential for studying genome evolution, and help to choose parameter...
2359 days ago
- ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequen...own read error model or quality profiles. ART supports simulation of single-end, paired-end/mate-...
2753 days ago
