List of visualization tools for network biology
Network analysis is any structured technique used to mathematically analyze a...ction networks across species to infer protein complexes that are conserved in evolution http://www.cs.tau.ac.il/~bne...2302 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for improving analysis protocols,...ormatics.zj.cn/magicviewer/ MapView Alignments of huge-scale single-end and pair-end short...2297 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for...sp;— move cursor to beginning of line ctrl+f — move cursor to end of li...2294 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of structur...cified by the keyword called BEGIN and END. The syntax is as follows:...le}{Actions for everyline in the file} END { Actions after reading the f...RIABLE_NAME) command: $ awk '{i[$1]=1}END{for (...2293 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotati...sp; find_ltr http://darwin.informatics.indiana.edu/cgi-bin/evolution/ltr.pl FINDMITE http:/...2288 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze their data using a very i...ines for time consuming jobs which automates analysis and leaves more time for end data...2278 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint...article/30/15/2210/2391162 Genome Architecture and Evolution of a Unichromosomal Asexual N...p://db-mml.sjtu.edu.cn/ICEberg/index.php Satsuma - Evolution and Genomics http://evomics....2255 days ago
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Tools to Predict the Impact of Missense Variants !
...studies for exploring complex and Mendelian diseases. A large number...onAssessor, Combined Annotation Dependent Depletion, LRT, phyloP, an...n alignment and a model of neutral evolution” FatHMM unweight...variantsh Combined Annotation Dependent Depletion (CADD)“CADD is a...2217 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, for example "GapFiller: a de...hose contigs contain. Let C = C0. 2. Repeat: a. Identify paired-end reads (not in C) for which one or both ends alig...2179 days ago