Frequent Paired-end reads (PE 2x100) mapping command lines
bowtie2 -x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r1.sai && bwa aln hs37m.fa r2.fq > r2.sai \ &&...2194 days ago
Ancestral sequence reconstruction steps !
Ancestral sequence reconstruction (ASR) – a...is a technique used in the study of molecular evolution. The method consists of the s...y to reveal the mechanisms and dynamics of protein evolution. BEAST is the...2191 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps DNA against D...ngth mismatch gapopen qstart qend sstart send evalue bitscore 1. ...lignment in query 8. qend end of alignment in query... Start of alignment in queryqend End of alignment in quer...2150 days ago
Parallel Processing with Perl !
Here is a small tutorial on how to make best use of multiple processors for bioinform...files and start Parallel::ForkManager.For example:opendir(DIRECTORY, $split_files_dir...the split file ;analyze my piece of $file;######### end fork...2092 days ago
904 days ago