ART is a set of simulation tools to generate synthetic next-generation sequencing reads....or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de...
The blog is a collection of script examples with example data and output plots. R produce excellent quality graphs for data analysis, science and business presentation, publications and other purposes. Self-help codes and examples are provided. Enjoy nice graphs !!
EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole...CNVs, both overlapping and non-overlapping targeted exons by integrating the analysis of In-targets and Off- target...
The automated reconstruction of genome sequences in ancient genome analysis is a multifaceted process.
EAGER encompasses both state-of-the-art tools for each step as well as new complementary tools tai...
Motif based sequence analysis suits
The MEME Suite allows the biologist to disco...analyses.
The MEME Suite supports motif-based analysis of DNA, RNA and prot...les of motifs (GOMo), measuring the positional enrichment of sequences for known moti...
MetaBAT, An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Mic...ns are >50% complete with <5% contamination from other species. Further analysis shows that the quality of the...
gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno.
More at http://gkno.me/
A flexible framework for rapid genome analysis and interpretation
C Chiang, R M Layer, G G Faust, M R Lindberg, D...rth, A R Quinlan, and I M Hall. SpeedSeq: ultra-fast personal genome analysis and interpretation. Nat Meth...
Harvest is a suite of core-genome alignment and visualization tools for quickly analyzin..., and phylogenetic trees.
Tools
Parsnp - Core-genome alignment and analysis
Gingr - Interactive vis...