Results for "Estimation"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...fferential expression analysis of small RNA sequencing experiments. McCormick et al., Silence2(1):2, 2011 PubMedCentral RNA-Seq gene expression estimation with read mapping uncertainty...3793 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...combination, migration and demography http://code.google.com/p/recodon/rlsim A package for simulating RNA-seq library preparation with parameter estimation http://bit.ly/rlsim-gitRmetas...3751 days ago
Next generation sequencing in R or bioconductor environment
...ntOverlaps function as introduced above. Documentation Differential Gene Expression Analysis with edgeR The edgeR package uses empirical Bayes estimation and exact tests based on the...3638 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...mates variance by all SNPs; 5 main functions: “data management, estimation of the genetic relationships...SNPs, mixed linear model analysis of variance explained by the SNPs, estimation of the linkage disequilibrium...2922 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...://pachterlab.github.io/kallisto/ Sailfish Estimation of isoform abundances from re...NP v3 Reference-free SNP identification and estimation of phylogenetic trees using S...ython) http://edwards.sdsu.edu/FOCUS/ GSM Estimation of abundances of microbial ge...2385 days ago
List of non-commercial NGS genotype-calling software
...Single-sample Aligned reads Software for SNP and genotype calling using single individuals and allele frequencies. Site frequency spectrum (SFS) estimation Samtools http://samtools.sou...2110 days ago
