Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitat...encing libraries. Aird et al, Genome Biology 12:R18, 2011 Full Text Ampli...count data. Anders and Huber, Genome Biology 11:R106, 2010 Full Text edge...te computational resources for plant biology research, provides access to...3777 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be free.../msr_er/archive/2011/10/18/microsoft-biology-foundation-evolves-into-new-t...ence Application") http://wolbachia.biology.virginia.edu/WuLab/Software.h...enkins and its plug-in API to create biology workflows and manage computer...3754 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and...on library and program package for evolutionary genetics and genomics. http:/...iversity under arbitrarily complex evolutionary scenarios http://cmpg.unibe.c...EDAGOG Software for simulating eco-evoluti...3734 days ago
List of In-silico Binding Site Prediction Tools
...onservation encapsulated in the evolutionary history.(more) metaPocket: h...ent of Computational and System Biology at the University of Pittsburgh....nd here. FINDSITE: http://cssb.biology.gatech.edu/findsite FIN...ction algorithm that integrates evolutionary sequence conservation es...3741 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides an...3622 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sanger,...rt reads alignment on desktop computer. From the Evolutionary Genomics Lab at Sun-Yat Sen U...SNP detection of short sequence reads. From the Evoluti...3516 days ago
Apps for Busy Bioinformatics Researchers !!!
...oduced in affiliation with the Computational Biology Center at Memorial Sloan-Kettering...public knowledge-base for information on the evolutionary timescale of life. This...on, National Institutes of Health, NASA Astrobiology Institute, and Science Founda...3539 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fin...IICB - Indian Institute of Chemical Biology, Calcutta IIP - Indian Inst...Centre for Cellular & Molecular Biology, Hyderabad CECRI - Central...Centre for Cellular and Molecular Biology Environment Protection Trai...2568 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sanger...rt reads alignment on desktop computer. From the Evolutionary Genomics Lab at Sun-Yat Sen U...SNP detection of short sequence reads. From the Evoluti...3240 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biological functions. In this section we include tools that can assist in prediction of inter...2200 days ago