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• • Rahul Agarwal@raag

  

  http://manuals.bioinformatics.ucr.edu/workshops #NGS #R #ChemInfo #RNA #ChiP-Seq #DNA #SNP

  3466 days ago

• • Rahul Agarwal@raag

  

  iRNA-seq !! http://bioinformatik.sdu.dk/solexa/webshare/iRNA/iRNA-v1.0-script.tar.gz #RNA-Seq

  3391 days ago

• • Jit@jit.aber

  

  A perl script for mapping fasta formated sequences to multiple reference sequences using one of several alignment programs. http://seq.crg.es/download/software/Miro/doc/run_Mapping.html #Perl #Script

  2769 days ago

• • Jit@jit.aber

  

  #GAP-Seq: a method for identification of DNA #palindromes http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-394

  2632 days ago

• • Jit@jit.aber

  

  Find a pattern in first 7 characters of reads. bioawk -c fastx 'substr($seq,0,7) == $TAG { print }' reads.fq.gz #Reads #NGS #Extract #Pattern

  2501 days ago

• • Rahul Agarwal@raag

  

  List of excellent scRNA-seq analysis tools- https://github.com/seandavi/awesome-single-cell

  2338 days ago

• • Rahul Agarwal@raag

  

  Complete and excellent tutorial for Single Cell Sequencing- https://hemberg-lab.github.io/scRNA.seq.course/index.html

  2338 days ago

• • Neelam Jha@neelam

  

  Reformat you fasta sequence with size. $ seqkit seq -w 50 allGenomeContacted.fa > allGenomeContacted_final.fa #Reformat #Fasta #Size

  2468 days ago

• • Manisha Mishra@manisha

  

  Remove the sequence by fasta ids. awk 'BEGIN{while((getline<"ids.txt")>0)l[">"$1]=1}/^>/{f=!l[$1]}f' seq.fa #Remove #Delete #ids #fasta

  2209 days ago

• • Aaryan Lokwani@aaryan

  

  Sed illegal charters from fasta. $ sed '/^[^>]/ s/[^AGTC]/N/gi' < seq.fa #fasta #otherthanATGC #replace #sed #Linux #illegal

  2144 days ago

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