Results for "FERMI"
Blogs
String graph based genome assembly software and tools !
...with significant improvement in quality for long NGS reads. It is relatively easy to extend BASE to include scaffolding. 5. Fermi https://github.com/lh3/fermi/ Fermi is a de novo assemble...2322 days ago
Bookmarks
- Fermi is a de novo assembler with a...of a typical assembler, fermi also aims to preserve heteroz...the information in raw reads.Fermi follows the overlap-layout-co...a typical de novo assembler, fermi tends to produce contigs with...sumed. Here is an example:run-fermi.pl -dAPe ./fermi -p NA12878 -...
2789 days ago
- ...unction jointly considering penalties on correction, quality and k-mer support. This algorithm was first implemented in my fermi assembler and then refined a few times in fermi, fermi2 and now in BFC. In th...
2160 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...istical model which can be used as a metric for evaluating assemblies. Fermi 1.1 – WGS de novo Assembler based on the FMD-index for large GenomesFermi is a de novo assembler f...2679 days ago
Top-level pages
Some useful Bioinformatics links
...9553/how-to-install-flash-plugin-on-ubuntu-14-04-lts-64-bit-version lh3/fermi: A WGS de novo assembler based on the FMD-index for large genomes https://github.com/lh3/fermi Multi-metagenome http://mads...2235 days ago
Tags
- Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mammal-sized genome. In addition to the role of a typical assembler, fermi also aims to preserve heterozygotes which are often collapsed by other assemblers. Its ultimate goal is...
Tags: Bioinformatics, Analysis, NGS, FERMI, Assembler, Genome
2789 days ago
